iTOL tree proGenomes v2.1 provides 84,096 consistently annotated bacterial and archaeal genomes from over 12000 species. These can be interactively explored and downloaded, whereby subsets can be customized e.g. taxonomic clades, representatives of each species or habitat-specific subsets. For each species cluster, precomputed pangenomes are available. In this update, genomes flagged for contamination were removed to provide a higher quality dataset.

Select a taxonomic clade or species cluster using the field below. Individual genomes can be searched using the explore genomes section.

Search for a taxonomic clade or specI cluster